PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G20210.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 747aa MW: 80850 Da PI: 6.7347

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G20210.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.2	1.7e-31	98	182	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f++lea OGLUM04G20210.2 98 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 182 8*******************************************************************866665..****985 PP
2	trihelix	107.8	7.4e-34	490	574	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r e++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+ OGLUM04G20210.2 490 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 574 8*******************************************************************8.99********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MQQHQGGGSQ YGAVPPDMGP FSPTHHASAP APLPLSSRPP PAALSQPPPP QQQQQPRTSY 60 DELAAATSAG AGGFPDDDML GDAGGSGGGG GSGAAGNRWP REETLALIRI RSEMDATFRD 120 ATLKGPLWEE VSRKLAELGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFTEL 180 EALHAAAPQT PQPQQHQQQQ LPPVTSSAPA MHAFAPPVPA PPPMSVMPPP PGPIQPAPIS 240 SAAPAVPLEL PPQPPINLQS LSFSSMSGSE SDDESEDDEM TAETGGSQDR LGKRKRGAGG 300 KRLATFFEGL IKQVVDRQEE MQRRFLETME KREAERTARE EAWRRQEVAR LNREQEQLAQ 360 ERAAAASRDA AIISFLQRIG GQSVQVPPAA TVIQMPTPVQ LQTPPPVKQP ARQHQPQPTP 420 PPPQAAPIPA APLQQQPPQP QHKETIHHEA VTPRSAPPTS GSSLELVPAA EQHVESGLGG 480 GEGGSASSSR WPKTEVQALI QLRMELDMRY QETGPKGPLW EEISSGMRRL GYNRSSKRCK 540 EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDVIYRRK HLTGGGGGGA SAANVAAMAI 600 EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ VPTSNGDTAP TTATFDVDSG MKKLTGNPLA 660 VKPEDIVREL SEQPPREFTT DETDSDDMGD DYTDDGEEGE DDGKMQYRIQ FQRPNPGGAN 720 TAPPPATTPA SAVTTSTPTS TFLAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MQQHQGGGSQ YGAVPPDMGP FSPTHHASAP APLPLSSRPP PAALSQPPPP QQQQQPRTSY  60
DELAAATSAG AGGFPDDDML GDAGGSGGGG GSGAAGNRWP REETLALIRI RSEMDATFRD  120
ATLKGPLWEE VSRKLAELGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFTEL  180
EALHAAAPQT PQPQQHQQQQ LPPVTSSAPA MHAFAPPVPA PPPMSVMPPP PGPIQPAPIS  240
SAAPAVPLEL PPQPPINLQS LSFSSMSGSE SDDESEDDEM TAETGGSQDR LGKRKRGAGG  300
KRLATFFEGL IKQVVDRQEE MQRRFLETME KREAERTARE EAWRRQEVAR LNREQEQLAQ  360
ERAAAASRDA AIISFLQRIG GQSVQVPPAA TVIQMPTPVQ LQTPPPVKQP ARQHQPQPTP  420
PPPQAAPIPA APLQQQPPQP QHKETIHHEA VTPRSAPPTS GSSLELVPAA EQHVESGLGG  480
GEGGSASSSR WPKTEVQALI QLRMELDMRY QETGPKGPLW EEISSGMRRL GYNRSSKRCK  540
EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDVIYRRK HLTGGGGGGA SAANVAAMAI  600
EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ VPTSNGDTAP TTATFDVDSG MKKLTGNPLA  660
VKPEDIVREL SEQPPREFTT DETDSDDMGD DYTDDGEEGE DDGKMQYRIQ FQRPNPGGAN  720
TAPPPATTPA SAVTTSTPTS TFLAMVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-48	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G20210.2