PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G19900.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 331aa    MW: 37516.2 Da    PI: 6.3912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G19900.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.1e-5671361129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeelv++yL+kkv+ kk++l +vik++d+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  OGLUM04G19900.1   7 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DVIKDIDLYKIEPWDLQEqcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKP 99 
                      69****************************.9***************952444442555*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
  OGLUM04G19900.1 100 IYV-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 136
                      ***.999*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDAFSHVPPG FRFHPTDEEL VDYYLRKKVA LKKIDLDVIK DIDLYKIEPW DLQEQCKIGN  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYRGRA  120
PNGQKSDWIM HEYRLETNEY GAPQEEGWVV CRVFKKRVAT VQRAAGDGGD SPFWFNEHVA  180
FMAPAPGLDS PYHGHRQSHP CKLEVEYHHH LLPQEAAPFM HLPRLESPKL PAADIIGATA  240
ASSALQPCGH TTAQQLQLQI EPVYVTADAS AADWRDLDKL VASQFGHGDS TAKEPSYCNP  300
VQVFQVEGKQ EDSLDYVSTS ASCGGEEDLW K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.16e-98NAC family protein