PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G17960.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 656aa MW: 67292.4 Da PI: 6.5076

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G17960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.4	1.2e-10	279	335	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g OGLUM04G17960.1 279 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 335 57*****************5444.2455535555.7799999***********98 PP
2	AP2	51.2	3e-16	378	429	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k ++lg+f t+eeAa+a++ a+ k++g OGLUM04G17960.1 378 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 429 89**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA 60 PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG GGEAPKLENF 120 LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP 180 PQHADQGMST DASASSYACS DVLVGSCGGG GGAGGTASSH GQGLALSMST GSVAAAAGGG 240 AVVAAESSSS ENKRVDSPGG AVDGAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN 300 SCRREGQSRK GRQGGYDKED KAARAYDLAA LKYWGTTTTT NFPMSNYEKE LEEMKHMTRQ 360 EYIAHLRRNS SGFSRGASKY RGVTRHHQHG RWQARIGRVA GNKDIYLGTF STEEEAAEAY 420 DIAAIKFRGL NAVTNFDMSR YDVKSILDSS TLPVGGAARR LKEAEAAAAA AGGGVIVSHL 480 ADGGVGGYYY GCGPTIAFGG GGQQPAPLAV HYPSYGQASG WCKPEQDAVI AAGHCATDLQ 540 HLHLGSGGAA ATHNFFQQPA SSSAVYGNGG GGGGNAFMMP MGAVVAAADH GGQSSAYGGG 600 DESGRLVVGY DGVVDPYAAM RSAYELSQGS SSSSVSVAKA ANGYPDNWSS PFNGMG

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG GGEAPKLENF  120
LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP  180
PQHADQGMST DASASSYACS DVLVGSCGGG GGAGGTASSH GQGLALSMST GSVAAAAGGG  240
AVVAAESSSS ENKRVDSPGG AVDGAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN  300
SCRREGQSRK GRQGGYDKED KAARAYDLAA LKYWGTTTTT NFPMSNYEKE LEEMKHMTRQ  360
EYIAHLRRNS SGFSRGASKY RGVTRHHQHG RWQARIGRVA GNKDIYLGTF STEEEAAEAY  420
DIAAIKFRGL NAVTNFDMSR YDVKSILDSS TLPVGGAARR LKEAEAAAAA AGGGVIVSHL  480
ADGGVGGYYY GCGPTIAFGG GGQQPAPLAV HYPSYGQASG WCKPEQDAVI AAGHCATDLQ  540
HLHLGSGGAA ATHNFFQQPA SSSAVYGNGG GGGGNAFMMP MGAVVAAADH GGQSSAYGGG  600
DESGRLVVGY DGVVDPYAAM RSAYELSQGS SSSSVSVAKA ANGYPDNWSS PFNGMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	1e-115	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G17960.1