PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G17500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 333aa MW: 34696.3 Da PI: 4.7969

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G17500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	8.1e-08	20	56	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++lfC+ + +lC+ C H g H OGLUM04G17500.1 20 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 56 68*************************9999.545556 PP
2	zf-B_box	22.9	1.7e-07	59	103	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p OGLUM04G17500.1 59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103 679*****************************6688888898877 PP
3	CCT	67.7	3.2e-23	239	282	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ OGLUM04G17500.1 239 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 282 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MEGDDKSAVV GGAYWGLAAR ACDACGGEAA RLFCRADAAF LCAGCDARAH GPGSRHARVW 60 LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGE LADAPKPGSG 120 AHGGDAAAAD DDGSNDAEAA SWLLPEPDHG QKDGAVGATD EFYADSDPYL DLDFARSMDD 180 IKAIGVQNGP PELDITGGKL FYSDHSMNHS VSSSEAAVVP DAAAGGGAPM PVVSRGRERE 240 ARLMRYREKR KSRRFEKTIR YASRKAYAET RPRIKGRFAK RTKGGAGADA DADADADGED 300 EEMYSSAAAA VAALMAPGGS DADYGVDGVV PTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	3e-35	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G17500.1