PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM04G17360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 929aa MW: 100855 Da PI: 6.153 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1e-28 | 558 | 609 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR++GI RWP+Rki+++ OGLUM04G17360.1 558 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGILRWPSRKINKV 609 589***********************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 929 aa Download sequence |
MDMPSPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR 60 MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD 120 DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP 180 FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH 240 ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNAVNLKAT KGSSNQKFYT 300 ENQKFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGKDGASFS QSGKTIIRIH 360 ESACYVNDGK MQGFLQACAR RHLEKGQGIA GRALKSNLPF FSPDIREYSI EDYPLAHHAR 420 KFSLHAAVAI RLRSTYTGKD DYILEFFLPV SCKGSGEQQM LLNNLSSTMQ RICKSLRTVY 480 EAEVDNVNAG TAAVFRKNNE SCLPTGHTES SSHGDQSITG ASFEDTSLAN KPGVMEPELA 540 EQVQPSSIGH AEKKRSTAEK NISLDVLRKY FSGSLKDAAK SLGVCPTTLK RICRHHGILR 600 WPSRKINKVN RSLKKIQTVI NSVHGVDRSL QYDPATGSLV PVVSLPEKLT FPSCDGLPTP 660 SVGKTVEENS DLKSEEGCSL PDGSQRQSCQ LQISDVKKSN EDEFHIGSGN SDFYGANATA 720 KSNSEVTQGP LCPTGAFSAL HLKGTDCTNP SSSLRPSSES TRNQIVGRNS PSIQQDLDML 780 DNHEAEDKDH MHPSTSGMTD SSSGSASSHP TFKQNTRSAL KDAASPALTV KATYNGDTVR 840 FKFLPSMGWY HLLEEIAKRF KLPTGAFQLK YKDDEDEWVI LANDSDLQEC VDVLDSIGSR 900 IVKLQVRDLP CIVSSSGSST CLQLAAHSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59580.1 | 1e-178 | Nin-like family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM04G17360.1 |