PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G16920.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 373aa    MW: 39502.4 Da    PI: 8.6567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G16920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11301346655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  OGLUM04G16920.1 301 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 346
                      689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP  60
ERAMRQQHYG GGGSGAAEIS LGHGHGHGHG GQHHFHQFGV EAKDGGGGGG GDQSGFLTRH  120
NSSPPGFFSS PVMDNGFSSS ARPAGSSLGE VRHGAMSSSS NNNKKMKAPL SFASSRQGSG  180
GLSQISEDGI PDLTDSIHGA AHHHGRSEEN VSTHDHVVRS FSSGGFSIGS WEDSNSIVFS  240
TSTGKSGAHG NDDIIATLSN YESQLVAPRE MAGVEKYLQM QHDQVPFRVR AKRGCATHPR  300
SIAERERRTR ISEKLRKLQA LVPNMDKQTS TSDMLDLAVD HIKGLQSQLQ TLKEDKEKCT  360
CSCKQASRNR PAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-44bHLH family protein