PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G16790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 172aa MW: 18677.1 Da PI: 9.3303 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 1.9e-07 | 143 | 162 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f++ G C++Gd C FaHg OGLUM04G16790.1 143 CLDFRK-GGCNHGDACEFAHG 162 999999.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MTESTKIKYC RADSGSGSGS KPLSAETKTR LMADGKKIDE EKKDGTAVRR VLFWFAVLVI 60 RFALLMAMHY YHVRMMAKLE GTNNDGFGLF LTCSHYDVTS SRCDGARAGG ARTGRSALSR 120 VRGRRRGGGT PDTRPYCDSG TACLDFRKGG CNHGDACEFA HGVFDNSSAD LA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 2e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G16790.1 |