PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G16630.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 385aa    MW: 41926.8 Da    PI: 6.0253
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G16630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix859e-2749117270
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                      W ++e+l+Li++rrem+++++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk + ++++
  OGLUM04G16630.1  49 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARG 117
                      ***************************************************************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MLLSGPSPQQ PTPPLLLPES SGEDGGHDSS SRAAASGGGG GPKKRAETWV QDETLCLIAL  60
RREMDSHFNT SKSNKHLWEA ISARMREQGF DRSPTMCTDK WRNLLKEFKK ARSHARGGGG  120
GGVGGGGAGT GGGNCPAKMA CYKEIDDLLK RRGKPTGGGG AAVGSGAVKS PTVTSKIDSY  180
LQFDKGFEDA SIPFGPVEAS GRSLLSVEDR LEPDSHPLAL TADAVATNGV NPWNWRDTST  240
NGGDNQVTFG GRVILVKWGD YTKRIGIDGT ADAIKEAIKS AFGLRTRRAF WLEDEDEVVR  300
SLDRDMPVGT YTLHLDTGMT IKLYMFENDE VRTEDKTFYT EEDFRDFLSR RGWTLLREYS  360
GYRIADTLDD LRPGVIYEGM RSLGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-135Trihelix family protein