PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G13380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 676aa MW: 75086 Da PI: 6.213

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G13380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	126	226	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++aee+ ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + OGLUM04G13380.1 126 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 216 99***************************7556666.59********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r OGLUM04G13380.1 217 SGELRVGVRR 226 999***97 PP
2	Auxin_resp	101.6	1e-33	252	337	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe+++++err+sGt++g+ ++ + W +S W+sLk OGLUM04G13380.1 252 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDEAPERRFSGTIIGIGSvpaMSKSPWADSDWKSLK 337 789***********************************************************987522267889******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ 60 QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK 120 CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH 180 IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS 240 SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF 300 EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL 360 DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFASSHVEF NSKNEPSILS NQFYWSMRDS 420 KTDSFSASTN KARVERKQEP TTVGCRLFGI EISSAVEEAL PAATVSGVGY DQTVLSVDVD 480 SDQISQPSNG NKSDAPGTSS ERSPLESQSR QVRSCTKVIM QGMAVGRAVD LTKLNGYGDL 540 RSKLEEMFDI QGDLCPTLKR WQVVYTDDED DMMLVGDDPW DEFCSMVKRI YIYSYEEAKL 600 LAPKSKLPVI GDTIKLSSMN SSHESVDLDN HASCQEVPKT GKTAWKRHSG KCMPFQIVLC 660 FGRSLGVLVW CPDLVD

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ  60
QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK  120
CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS  240
SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF  300
EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL  360
DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFASSHVEF NSKNEPSILS NQFYWSMRDS  420
KTDSFSASTN KARVERKQEP TTVGCRLFGI EISSAVEEAL PAATVSGVGY DQTVLSVDVD  480
SDQISQPSNG NKSDAPGTSS ERSPLESQSR QVRSCTKVIM QGMAVGRAVD LTKLNGYGDL  540
RSKLEEMFDI QGDLCPTLKR WQVVYTDDED DMMLVGDDPW DEFCSMVKRI YIYSYEEAKL  600
LAPKSKLPVI GDTIKLSSMN SSHESVDLDN HASCQEVPKT GKTAWKRHSG KCMPFQIVLC  660
FGRSLGVLVW CPDLVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G13380.1