PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G12700.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 506aa    MW: 52695 Da    PI: 8.4218
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G12700.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.22.6e-75914971374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+lLl+++ a ++gd++ a a+L ++  +as +g  dp qR+aa+++ ALa rla    +l  a ++ +++    +e++ a+++f+++sP+++
  OGLUM04G12700.1  91 LVRLLLSAVAAGEAGDARTAAAALREVDRRASCRGggDPAQRVAACYAAALAPRLAA---GLRPARSSPAAPAAARAEQFLAYTMFYQASPFYQ 181
                      6899**************************99998789******************9...44444444444444589999************** PP

             GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspesgskeeleetgerL 165
                      f+h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q+L++ ++                    p slRiTg+g+    s++el+et+ rL
  OGLUM04G12700.1 182 FAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAAAatsssshddddngggcgdgPVSLRITGFGA----SADELRETEARL 271
                      **************9876699*********************988744455677888888999999788*********....9*********** PP

             GRAS 166 akfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnse.. 251
                      ++fA+ + +++fef+  + ++ ++ + +  r++ + +++Vnlv+   +     ++      + +  ++sl+P +v ++e+      +    +  
  OGLUM04G12700.1 272 RRFAAGCpNLRFEFEG-ILNNGSNTRHDCTRIDDDATVVVNLVFPASSRE---AC----AATRMAYINSLNPSMVFLIEKHdggggL----Tgg 353
                      ***998769*******.6999***********************655553...22....234699**************97555431....133 PP

             GRAS 252 .........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle.......kWrerleeaGFkpvpl 329
                               s+l rf+  l+y++a+fdsl++ lp++s er  +Er  lgrei ++va    ++r rh   +       +W++++e aG+  v+l
  OGLUM04G12700.1 354 dntttgrsaSLLPRFAANLRYFAAVFDSLHECLPADSAERLAIERDHLGREIADAVASLDHQHRRRHGGGGdhaaaswNWKAAMEGAGLDGVKL 447
                      455566777*************************************************9999999997543222222379************** PP

             GRAS 330 sekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                      s+++++qaklll++ +   + g+rv e +g +   l W+d +L ++++Wr
  OGLUM04G12700.1 448 SSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATVWR 497
                      ************9977422455***9998877668**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MNLTLSLAID GGGGGGAAAA AAAAAVAKKS KVVGGGAVVV DGVGSSAICG GDRGSRVRDR  60
MVKKAEEFDH ENGMAATSSD GGGGGGGGME LVRLLLSAVA AGEAGDARTA AAALREVDRR  120
ASCRGGGDPA QRVAACYAAA LAPRLAAGLR PARSSPAAPA AARAEQFLAY TMFYQASPFY  180
QFAHFTANQA IVEAFESGGR RRLHVVDFDV SYGFQWPSLI QSLSDAAAAA TSSSSHDDDD  240
NGGGCGDGPV SLRITGFGAS ADELRETEAR LRRFAAGCPN LRFEFEGILN NGSNTRHDCT  300
RIDDDATVVV NLVFPASSRE ACAATRMAYI NSLNPSMVFL IEKHDGGGGL TGGDNTTTGR  360
SASLLPRFAA NLRYFAAVFD SLHECLPADS AERLAIERDH LGREIADAVA SLDHQHRRRH  420
GGGGDHAAAS WNWKAAMEGA GLDGVKLSSR TVSQAKLLLK MKSGCGGGGF RVVEGDGGMA  480
MSLAWRDMAL ATATVWRRRR RRRRCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1497502RRRRRR
2497503RRRRRRR
3497504RRRRRRRR
4498503RRRRRR
5498504RRRRRRR
6498505RRRRRRRR
7499504RRRRRR
8499506RRRRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.19e-31GRAS family protein