PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G12170.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 513aa MW: 53930 Da PI: 10.5469

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G12170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.8	4.2e-24	217	305	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ OGLUM04G12170.1 217 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 305 6****************************************9988..9999***************9**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNAPPKPN PPITPAPARN ASAAPPSGSP 60 ATAAAAAPVP SRKESGSTSA AAPAAATRKA SGVAAATTGV LPRKPPGTTA PVAARNIPAT 120 TAASRTATRA TTTTTATSVS RRPAAAAAVA SRIPLRATAA TTTHAASRNP LTGAAAATAT 180 ATVAAVGRGG FRAAPTRPEE YTPRMGMEFE SEHEAYEFYR YYGWKVGFNV RKEYANKSKK 240 TGEITSRKFA CSREGYRANV KRGNHMVPMP DSRTGCNAHL VIRRKKPGAK LEVYAFQPRH 300 NHPLFATSCM PNPLQPNVVH WTTLPDAVTP PDLLMDGENI MDKSSGTTAK ESKKKGQKNK 360 IQSRNCIEKG LRKKQKVHSE QPGEYALLGG SQSGNMFQAF EGPPNMSPLG TQTPTYKTYR 420 GIDLSSPMGP ISYDEMPSGL DPTFTTHLGF ATYHTSQVSS SSPHNQANVK DYPISIRSSI 480 QQLLYIIQLI MPNGAAIFPI GICSTGTIAQ ANL

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNAPPKPN PPITPAPARN ASAAPPSGSP  60
ATAAAAAPVP SRKESGSTSA AAPAAATRKA SGVAAATTGV LPRKPPGTTA PVAARNIPAT  120
TAASRTATRA TTTTTATSVS RRPAAAAAVA SRIPLRATAA TTTHAASRNP LTGAAAATAT  180
ATVAAVGRGG FRAAPTRPEE YTPRMGMEFE SEHEAYEFYR YYGWKVGFNV RKEYANKSKK  240
TGEITSRKFA CSREGYRANV KRGNHMVPMP DSRTGCNAHL VIRRKKPGAK LEVYAFQPRH  300
NHPLFATSCM PNPLQPNVVH WTTLPDAVTP PDLLMDGENI MDKSSGTTAK ESKKKGQKNK  360
IQSRNCIEKG LRKKQKVHSE QPGEYALLGG SQSGNMFQAF EGPPNMSPLG TQTPTYKTYR  420
GIDLSSPMGP ISYDEMPSGL DPTFTTHLGF ATYHTSQVSS SSPHNQANVK DYPISIRSSI  480
QQLLYIIQLI MPNGAAIFPI GICSTGTIAQ ANL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-17	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G12170.1