PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G11850.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 409aa    MW: 45273.8 Da    PI: 5.1376
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G11850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP45.61.1e-141371683871
          E2F_TDP  38 dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +v  ++RRiYDi+NVLe+ +liekk kn+irw+g
  OGLUM04G11850.1 137 QV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 168
                      34..8***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MSSGGGRPPA AQHIVRSVRQ RFVPLPPPLA RAPFAAAPGD YHRFAAASRG GEIEEGIVIR  60
RTPLKRKTPC GESEAAESSE RMMTSPGFTE GVGSPLMTPV SGKSSRTTKS MAKFNKAGPQ  120
TPISNAGKFI YGFQQKQVRK RRIYDITNVL EGTGLIEKKL KNRIRWRGSD DSGTNLDSDI  180
SCLKTEVENL YIQEQALDRS ISEIREKMEE LTEDESNHRW LFVTEDDIKG LPCFQNEALI  240
AIKGPRGTTV EVPDPDELLP QKKLSDEHPY YIISQYKKME ELGETATPPR HASVVEPPSI  300
ATEAGHSSKQ TMPLNVQQDI QETPELNASR AFGRMKKITP SDVDTDADYW LLTDDDISIT  360
HMWTTASEMQ WDQIDTNDFL AEEISDTPCA LNQPSAAASE PTGVGFNHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139161RKRRIYDITNVLEGTGLIEKKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.14e-68E2F/DP family protein