PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G11330.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8881.59 Da    PI: 10.5244
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G11330.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA1404.9e-441180270
             S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     +v+++e+ kGlnPG+ivl+vv+++ll+f+vgny+lyvyaqk+lPPrkkkPvskkk+kreklkqGv++PGe
  OGLUM04G11330.2 11 NVVIEEVnKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 80
                     67788888*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MADQFADSAN NVVIEEVNKG LNPGMIVLIV VATFLLLFFV GNYALYVYAQ KTLPPRKKKP  60
VSKKKMKREK LKQGVSAPGE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.12e-12S1Fa-like family protein