PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G11230.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 480aa MW: 50683.9 Da PI: 7.2009

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G11230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.2	5.6e-15	100	181	9	86
trihelix 9 aLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +L++ ++++ e+l+rg+l++ +We+v++++ + +s +qCk+k++nl+kryk + ++ + + ++s++p+f+++e OGLUM04G11230.1 100 DLLDSYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRLAGSGASAVSHWPWFKKME 181 5999************************6655344446899***********888887777677888******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPPQQQAQ AFCFGDAASV AGAGAGVGPF 60 APMGQEEGNH SAERGKAAAA AAHHSKRGRD RAEEFSDGGD LLDSYTDRFE QLNRGNLRGR 120 DWEDVAAAVT DGQGKSSGGK SVEQCKNKID NLKKRYKVEC QRLAGSGASA VSHWPWFKKM 180 EQIVGNSSSP ASSKALVASD DDNKPRQPQQ HSSKRHAPSG SSTPTFGGSS RLAPPSNPKW 240 KRVLLKIGGT ALAGAPPQNV DPKVIMLIAR EVQVACRHGV EVSIVVGGRN IFCGDTWVSA 300 TGTDRASTYS IGMMASVMNA VLLQASLEKI GVETRVQTAL MMQEVAEPYI RRRAIRHLEK 360 GRVVIFAGIG AGIGNPLFTT DTAAALRASE INADVVLKGT AGDDDYGCPP RGNNNPPFEH 420 ISFRELAARG FSRMDMTAIT CCQENNIPVV IFNMLEPGNI SKAICGDQVG TLVDQSGRIT

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPPQQQAQ AFCFGDAASV AGAGAGVGPF  60
APMGQEEGNH SAERGKAAAA AAHHSKRGRD RAEEFSDGGD LLDSYTDRFE QLNRGNLRGR  120
DWEDVAAAVT DGQGKSSGGK SVEQCKNKID NLKKRYKVEC QRLAGSGASA VSHWPWFKKM  180
EQIVGNSSSP ASSKALVASD DDNKPRQPQQ HSSKRHAPSG SSTPTFGGSS RLAPPSNPKW  240
KRVLLKIGGT ALAGAPPQNV DPKVIMLIAR EVQVACRHGV EVSIVVGGRN IFCGDTWVSA  300
TGTDRASTYS IGMMASVMNA VLLQASLEKI GVETRVQTAL MMQEVAEPYI RRRAIRHLEK  360
GRVVIFAGIG AGIGNPLFTT DTAAALRASE INADVVLKGT AGDDDYGCPP RGNNNPPFEH  420
ISFRELAARG FSRMDMTAIT CCQENNIPVV IFNMLEPGNI SKAICGDQVG TLVDQSGRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-148	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G11230.1