PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G11190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 88aa MW: 10229.6 Da PI: 6.767 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 38.4 | 3.6e-12 | 45 | 87 | 45 | 87 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 + ++lp +++ d++sslvyeA+ ++rdPvy +v+ i+ lq+ql OGLUM04G11190.1 45 IRQELPVQQQGDTVSSLVYEANDWMRDPVYDCVRAISFLQNQL 87 668999***********************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence |
MLIKDYLYHV HSDFIHGKAR LYLQQCGRRD QRVKLPTCAG GSEEIRQELP VQQQGDTVSS 60 LVYEANDWMR DPVYDCVRAI SFLQNQLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-15 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G11190.1 |