PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10880.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 294aa    MW: 29947.4 Da    PI: 4.3061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1850101156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  OGLUM04G10880.1  50 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 101
                      5799******.**********843...4*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MMNFSSYFYS STAAAGGGGG GEKKSSSSSS ASKKKQQQAA AAAEGGNNQT RYLGVRRRPW  60
GRYAAEIRDP ATKERHWLGT FDTAEEAAVA YDRAARSLRG ARARTNFAYP DLPPGSSVTP  120
YLSPDLSADA SDQLLQPFYA NPSAAAALPT PAAVMAGGGV EFGGEYMSVY GGGGVDMSSL  180
MDDIAMPDDL PPSVNGGGGG FASSDEYSSG GCGGGMVDDV SVYGGGNGGG SSWCDASDFA  240
SYSSSSPAAA AAGSHGMYFE EGYVHSPLFS PMPAVDDAGA DGFQLGGSSS SYYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-24ERF family protein