PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G06590.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 289aa    MW: 30704.3 Da    PI: 7.0465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G06590.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-1398143555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +Lq
  OGLUM04G06590.1  98 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 143
                      6789*********************7.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MEAAADMGVL LDLYWHTPHI FDLAVADSLL MDGFGGGMYV PAPAPATPAM VEKEYDESLS  60
ELYAYTSQSR YANSSSPDVV NSCSTAAVSA AAAASSKNIA MERDRRKRLN EKLFALRAVV  120
PKITKMDKAS IVRDAIAHIE KLQEEERQLL DEISVLQSTA AAAAAATTVV KDDNGGVAMP  180
RMKKLRSTPP LDGGGGALRV TSSPSLQILE LQASKVGEKT VAVSIRCAKT RGAMAKVCHA  240
VESLRLKVVS ASVAAVDGTI VHTMLVETEQ MSGAQEMKQR IQSSLLSAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-39bHLH family protein