PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G04620.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 128aa    MW: 14246.7 Da    PI: 7.5129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G04620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.2e-211061155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GVr+++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ +++g
  OGLUM04G04620.1 10 SKYRGVRRRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 61
                     89********.**********8333..4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MEDDKKEAAS KYRGVRRRPW GKFAAEIRDP ERGGSRVWLG TFDTAEEAAR AYDRAAFAMK  60
GAMAVLNFPG RTSSTGSSSS SSSTPPAPVT TSRHRADTTE KVELVYLDDK VLDELLAEDY  120
SYRNNNNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-23ERF family protein