PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G04030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 340aa MW: 37409.9 Da PI: 7.9334

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G04030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl OGLUM04G04030.1 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.6	5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+ Ed ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ OGLUM04G04030.1 69 GEFTEHEDRIICSMFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FTEHEDRIIC SMFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLGS 120 SAAAAAAPPR MQRHQQSHHR SSLLLPNSPS LNPGGGYPGF FSGAGGFHPQ EPAMPLTLPT 180 TTQEFMLGIH SGHPMVSASA LLNHLHGASH HHQLLVKEEI SSNMIVFGSD QQSCSSSDGL 240 AAPHSHHHNG NREFILDGYS YGGGYGNSCI DQVDNDKLFQ HHQQDDQAQE QQQQLVYNYD 300 EIKQLLMNTS TTSNNINAGQ DHGGSMEAGL IGSQGKVTMM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-70	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G04030.1