PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G00800.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 694aa MW: 76656.1 Da PI: 7.2785 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 112 | 124 | 14 | 26 |
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyGd+C+F+H+ OGLUM04G00800.2 112 SCKYGDSCRFSHD 124 7***********6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence |
MPPHRAATMA ATAAAAAAAP PADLPDSSPA ASSPPRPSPE ELVARAVAPV KPAFLRPPPV 60 RDAPKDEGKA NGGGAVVAEK KSKRQLKRER KQEQKSSSHL CIEVGKSGNV SSCKYGDSCR 120 FSHDIDAYLA QKPADLEGMC PFTSLDQLCP YGLTCRFLGT HKYIHAASGN LSEKHEINAL 180 NKDIQKLLWK NKYKFPKASA QIKLLGLKEV IKSKPDAAND DKKVNHDNLD GNGDEKKEPL 240 CNPPVNAECD STLCEELDRS EGEPLIDNSI TCVEPRPTKK SKVESDEIDK HGAGTLNTKV 300 ESEDPNLSNG LEVPSNNASS CRTDLITTPH LREKKIIDFR EKLYLAPLTT VGNLPFRRLC 360 KTLGADITCG EMAMCTNLLQ GQASEWALLR RHSSEDLFGV QICGAYPDTV ARTVELVDNE 420 CSVDFIDINM GCPIDIVVNK GAGSSLLTKP MRIKSIVQAA STVTEKPLTV KVRTAFFEGR 480 NRADSIVSDI YDWGASAITV HGRSRQQRYS KLADWDYIYQ CAQKAPDQLH VVGNGDVFSF 540 TDWNKHVSGC SKISTCMIAR GALIKPWIFT EIKEQRHWDI TSGERFNILK DFVSFGLEHW 600 GSDSKGVETT RYFLLEWLSY TCRYIPVGLL DVIPQRLNWR PPSYCGRDDL ETLMISDSAA 660 DWIRISEMLL GKVPEGFTFT PKHKSNAYDR AENG |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G00800.2 |