PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G00590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

E2F/DP

Protein Properties

Length: 478aa MW: 51861.1 Da PI: 4.8298

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G00590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	82.7	3e-26	200	265	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++lle +e+g+++ln++a++L +v ++RRiYDi+NVLe+++liek+ kn irwkg OGLUM04G00590.1 200 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 265 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHR APPPPGAHVH YFRAASPIPI 60 FRAAASSRPP RPPPPSTTAA AAPPPAAPAV TPARPPPQQP AVAVAPPPAT TTATATEEVA 120 APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKES TTGTVKGIKR PRKPKGFKKG 180 SLRSNEGDAG PSLFSPNNCR YDSSLGLLTK KFINLLEGAE DGTLDLNKAA ETLEVQKRRI 240 YDITNVLEGV DLIEKTLKNM IRWKGFDMSK PKERERQISA LKEEIESLYD EESRLDDEIM 300 EAQEKLNALR VDEDRRKLLY VSKEDINAIP RFQGSTLIAV NAPRGTYIEV PDPNLDMDIY 360 KDLDNQEKHY QIVFRSAMGP VDCFLISNHQ ETFNADQQMA DNLDAAVTSG SSQAPQQMDY 420 VQASEIGESN GVREHTSEPS KRDDPVPGIV KIVPSDDIAA DYWLSSDADV SMTDTWGT

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHR APPPPGAHVH YFRAASPIPI  60
FRAAASSRPP RPPPPSTTAA AAPPPAAPAV TPARPPPQQP AVAVAPPPAT TTATATEEVA  120
APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKES TTGTVKGIKR PRKPKGFKKG  180
SLRSNEGDAG PSLFSPNNCR YDSSLGLLTK KFINLLEGAE DGTLDLNKAA ETLEVQKRRI  240
YDITNVLEGV DLIEKTLKNM IRWKGFDMSK PKERERQISA LKEEIESLYD EESRLDDEIM  300
EAQEKLNALR VDEDRRKLLY VSKEDINAIP RFQGSTLIAV NAPRGTYIEV PDPNLDMDIY  360
KDLDNQEKHY QIVFRSAMGP VDCFLISNHQ ETFNADQQMA DNLDAAVTSG SSQAPQQMDY  420
VQASEIGESN GVREHTSEPS KRDDPVPGIV KIVPSDDIAA DYWLSSDADV SMTDTWGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.3	1e-82	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G00590.1