PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G00160.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 865aa MW: 93990.7 Da PI: 5.174

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G00160.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	52	83	1	27
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++Gd+C++aH++ OGLUM04G00160.1 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83 8********88***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence
MEMEMKDNKA PSPPPPMESD IAGEKRKRED DASSSAVLDA ANNTGGAQHP MWKTSLCSFF 60 RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID 120 NKALDKCLVG LPRGWANDRL KTFLQDKART NYSSILPPAL LLGISYATAK KKKGMTVGFV 180 TFENIEQLKN AIEVLTENQS GGKEIKIADA NRRSHQKLHT EKPVSDNGVA TENGTSVDVP 240 PGETSAPEAA ISNKKSVRDA VTPLAHMSYN DQLEHKKNSV AQILKRLTRN ARKACPTGIP 300 LPDWVFKSKE IGGLPCKLEG ILESPVINGY RNKCEFSVGF SLEGKKTVGF MLGNFREGVT 360 AVEEPVDCPN VSEISCKYAL MFQDFLQSSS LPVWNRVDNC GFWRQFTVRE GRCRAQAVAQ 420 NAETQISEVM LIVQVCSTGV DDALMKDEFD KLTVALQQGA ATCSPPLPLT TIVVQDHKGI 480 SNAAPADCPS IPLLVPKVDQ SEGTVDKTRI HDHIGNLWFS ISPTAFFQVN TLAAERLYTL 540 AGDWANLNSG TLLFDVCCGT GTIGLTLAHR VGMVVGIEMN ESAVSDAERN ALINGVSNCR 600 FVCGKAEDVM GSLLTEYLGS PQQDIPVSEG AVSGTVKDEE VIDGSKNSSE NLDSSMQKND 660 NGESQQLGDA PADSSSSAID EIKGNSNDRV GNGLEGSHDE YNEVAGEDIH GEASLINESV 720 DLKVSDCLED RKTSDDGSSI SNNDVTAATA CQFEDIVAIV DPPRVGLHPT VIKALRTHPR 780 IRRLVYISCN PDSLVANAIE LCTPSSEKQE KNKGNRGWRT MSSAGLARQR TKSMPNSEPF 840 VPKRAMAVDL FPHTSHCEMV MLFER

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence

MEMEMKDNKA PSPPPPMESD IAGEKRKRED DASSSAVLDA ANNTGGAQHP MWKTSLCSFF  60
RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID  120
NKALDKCLVG LPRGWANDRL KTFLQDKART NYSSILPPAL LLGISYATAK KKKGMTVGFV  180
TFENIEQLKN AIEVLTENQS GGKEIKIADA NRRSHQKLHT EKPVSDNGVA TENGTSVDVP  240
PGETSAPEAA ISNKKSVRDA VTPLAHMSYN DQLEHKKNSV AQILKRLTRN ARKACPTGIP  300
LPDWVFKSKE IGGLPCKLEG ILESPVINGY RNKCEFSVGF SLEGKKTVGF MLGNFREGVT  360
AVEEPVDCPN VSEISCKYAL MFQDFLQSSS LPVWNRVDNC GFWRQFTVRE GRCRAQAVAQ  420
NAETQISEVM LIVQVCSTGV DDALMKDEFD KLTVALQQGA ATCSPPLPLT TIVVQDHKGI  480
SNAAPADCPS IPLLVPKVDQ SEGTVDKTRI HDHIGNLWFS ISPTAFFQVN TLAAERLYTL  540
AGDWANLNSG TLLFDVCCGT GTIGLTLAHR VGMVVGIEMN ESAVSDAERN ALINGVSNCR  600
FVCGKAEDVM GSLLTEYLGS PQQDIPVSEG AVSGTVKDEE VIDGSKNSSE NLDSSMQKND  660
NGESQQLGDA PADSSSSAID EIKGNSNDRV GNGLEGSHDE YNEVAGEDIH GEASLINESV  720
DLKVSDCLED RKTSDDGSSI SNNDVTAATA CQFEDIVAIV DPPRVGLHPT VIKALRTHPR  780
IRRLVYISCN PDSLVANAIE LCTPSSEKQE KNKGNRGWRT MSSAGLARQR TKSMPNSEPF  840
VPKRAMAVDL FPHTSHCEMV MLFER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G00160.1