PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM03G40060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 22867.6 Da PI: 6.4192 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1.1e-09 | 129 | 174 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W++eE+ + ++++++ G g+W+ I+ + Rt+ q+ s+ qky OGLUM03G40060.1 129 GPWSEEEHRQCLRGIEEIGHGRWTQISIEYVPSRTPIQIASHSQKY 174 89*************************98888************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence |
MGDLVGDGAA PAAAEPAPAA AACRWTRQKD KLLETLVARC AMNRQCVGGW DAIAAAFGDD 60 TTAAQVEQRY GEIAAEVRRV MEEPWDAEDP AIAAAAAAVP AAPVKHAAAG PGSDGGGEEG 120 KVVVEKKSGP WSEEEHRQCL RGIEEIGHGR WTQISIEYVP SRTPIQIASH SQKYFLRMAK 180 PKEDRKRKSI HDTPYHLHLP NAADAHAHQQ QQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-18 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM03G40060.1 |