PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G38790.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 419aa MW: 45528.8 Da PI: 8.0367

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G38790.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.4	3e-07	121	142	1	22
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + OGLUM03G38790.2 121 SQYRGVTFYRRTGRWESHIWAY 142 78*****************984 PP
2	AP2	42.1	2.1e-13	194	244	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +++g OGLUM03G38790.2 194 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 244 79******.7**...5...334336******99********99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MVLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGGGG GLFRFDLLAS SPDDDECSGE 60 QHQLPAASGI VTRQLLPPPP PAAPSPAPAW QPPRRAAEDA ALAQRPVVAK KTRRGPRSRS 120 SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLEADINFNL SDYEDDLKQM RNWTKEEFVH 180 ILRRQSTGFA RGSSKFRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDTEVE AARAYDRAAI 240 RFNGREAVTN FEPASYNVDA LPDAGNEAIV DGDLDLDLRI SQPNARDSKS DVATTGLQLT 300 CDSPESSNIT VHQPMGSSPQ WTVHHQSTPL PPQHQRLYPS HCLGFLPNLQ ERPMDRRPEL 360 GPMPFPTQAW QMQAPSHLPL LHAAASSGFS AGAGAGVAAA TRRQPPFPAD HPFYFPPTA

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MVLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGGGG GLFRFDLLAS SPDDDECSGE  60
QHQLPAASGI VTRQLLPPPP PAAPSPAPAW QPPRRAAEDA ALAQRPVVAK KTRRGPRSRS  120
SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLEADINFNL SDYEDDLKQM RNWTKEEFVH  180
ILRRQSTGFA RGSSKFRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDTEVE AARAYDRAAI  240
RFNGREAVTN FEPASYNVDA LPDAGNEAIV DGDLDLDLRI SQPNARDSKS DVATTGLQLT  300
CDSPESSNIT VHQPMGSSPQ WTVHHQSTPL PPQHQRLYPS HCLGFLPNLQ ERPMDRRPEL  360
GPMPFPTQAW QMQAPSHLPL LHAAASSGFS AGAGAGVAAA TRRQPPFPAD HPFYFPPTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	3e-76	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G38790.2