PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G38790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 438aa MW: 47491 Da PI: 7.9709

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G38790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.5	3e-17	121	170	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OGLUM03G38790.1 121 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 170 78*****************......55**********************998 PP
2	AP2	42	2.3e-13	213	263	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +++g OGLUM03G38790.1 213 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 263 79******.7**...5...334336******99********99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MVLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGGGG GLFRFDLLAS SPDDDECSGE 60 QHQLPAASGI VTRQLLPPPP PAAPSPAPAW QPPRRAAEDA ALAQRPVVAK KTRRGPRSRS 120 SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LEADINFNLS 180 DYEDDLKQMR NWTKEEFVHI LRRQSTGFAR GSSKFRGVTL HKCGRWEARM GQLLGKKYIY 240 LGLFDTEVEA ARAYDRAAIR FNGREAVTNF EPASYNVDAL PDAGNEAIVD GDLDLDLRIS 300 QPNARDSKSD VATTGLQLTC DSPESSNITV HQPMGSSPQW TVHHQSTPLP PQHQRLYPSH 360 CLGFLPNLQE RPMDRRPELG PMPFPTQAWQ MQAPSHLPLL HAAASSGFSA GAGAGVAAAT 420 RRQPPFPADH PFYFPPTA

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MVLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGGGG GLFRFDLLAS SPDDDECSGE  60
QHQLPAASGI VTRQLLPPPP PAAPSPAPAW QPPRRAAEDA ALAQRPVVAK KTRRGPRSRS  120
SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LEADINFNLS  180
DYEDDLKQMR NWTKEEFVHI LRRQSTGFAR GSSKFRGVTL HKCGRWEARM GQLLGKKYIY  240
LGLFDTEVEA ARAYDRAAIR FNGREAVTNF EPASYNVDAL PDAGNEAIVD GDLDLDLRIS  300
QPNARDSKSD VATTGLQLTC DSPESSNITV HQPMGSSPQW TVHHQSTPLP PQHQRLYPSH  360
CLGFLPNLQE RPMDRRPELG PMPFPTQAWQ MQAPSHLPLL HAAASSGFSA GAGAGVAAAT  420
RRQPPFPADH PFYFPPTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-90	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G38790.1