PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G36280.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 351aa MW: 35710.3 Da PI: 7.243 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.9 | 1.1e-35 | 46 | 157 | 5 | 105 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssasn 84 +drhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++ ++ + ++s++++++ OGLUM03G36280.3 46 RDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRQRSQQQQQQ 135 8************************************************************8888876643321....2223323333333333 PP TCP 85 sssgkaaksaa.kskksqksaa 105 s+++ ++s+ +sk s+k+ + OGLUM03G36280.3 136 LSNKSGCSSTSeTSKGSDKEVT 157 3333333333323333333333 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence |
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRDRHS KVYTAKGIRD 60 RRVRLSVATA IQFYDLQDRL GFDQPSKAIE WLINAASPAI DTLPSLDPAA FAAIPHAAAA 120 DAAPTRQRSQ QQQQQLSNKS GCSSTSETSK GSDKEVTVAS APAQAASFTE LLIAGVAASS 180 AGGGAIGNGA DCVGIAHPGK GGAEGASTYG FSAASSFGDA PPIGMVPAPP FNFSAPGADM 240 AAHYSLAQDQ LAAPPPPAGG DYNLNFSMSS GFLGANRGTL QSNSPSNMSG HHHHHHQQQL 300 QRLDGSTISF LLGHAAAAAH PAASEGQITS TAALQLWDGF HHSGMKEKSK N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.1 | 1e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G36280.3 |