PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G36280.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 363aa MW: 36663.1 Da PI: 8.6808

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G36280.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.8	6.5e-37	68	183	1	105
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaessss 80 a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++ ++ + ++s++ OGLUM03G36280.2 68 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRQRSQQ 157 5899*************************************************************8888876643321....222332333333 PP TCP 81 sasnsssgkaaksaa.kskksqksaa 105 ++++ s+++ ++s+ +sk s+k+ + OGLUM03G36280.2 158 QQQQLSNKSGCSSTSeTSKGSDKEVT 183 33333333333333323333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGXGQTGSTA 60 SRIYRVRATG GKDRHSKVYT AKGIRDRRVR LSVATAIQFY DLQDRLGFDQ PSKAIEWLIN 120 AASPAIDTLP SLDPAAFAAI PHAAAADAAP TRQRSQQQQQ QLSNKSGCSS TSETSKGSDK 180 EVTVASAPAQ AASFTELLIA GVAASSAGGG AIGNGADCVG IAHPGKGGAE GASTYGFSAA 240 SSFGDAPPIG MVPAPPFNFS APGADMAAHY SLAQDQLAAP PPPAGGDYNL NFSMSSGFLG 300 ANRGTLQSNS PSNMSGHHHH HHQQQLQRLD GSTISFLLGH AAAAAHPAAS EGQITSTAAL 360 QLN

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGXGQTGSTA  60
SRIYRVRATG GKDRHSKVYT AKGIRDRRVR LSVATAIQFY DLQDRLGFDQ PSKAIEWLIN  120
AASPAIDTLP SLDPAAFAAI PHAAAADAAP TRQRSQQQQQ QLSNKSGCSS TSETSKGSDK  180
EVTVASAPAQ AASFTELLIA GVAASSAGGG AIGNGADCVG IAHPGKGGAE GASTYGFSAA  240
SSFGDAPPIG MVPAPPFNFS APGADMAAHY SLAQDQLAAP PPPAGGDYNL NFSMSSGFLG  300
ANRGTLQSNS PSNMSGHHHH HHQQQLQRLD GSTISFLLGH AAAAAHPAAS EGQITSTAAL  360
QLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	5e-34	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G36280.2