PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G36280.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 337aa    MW: 34054.4 Da    PI: 6.9661
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G36280.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1159.8e-36461575105
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssasn 84 
                      +drhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  ++  + ++s++++++
  OGLUM03G36280.1  46 RDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRQRSQQQQQQ 135
                      8************************************************************8888876643321....2223323333333333 PP

              TCP  85 sssgkaaksaa.kskksqksaa 105
                       s+++ ++s+  +sk s+k+ +
  OGLUM03G36280.1 136 LSNKSGCSSTSeTSKGSDKEVT 157
                      3333333333323333333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRDRHS KVYTAKGIRD  60
RRVRLSVATA IQFYDLQDRL GFDQPSKAIE WLINAASPAI DTLPSLDPAA FAAIPHAAAA  120
DAAPTRQRSQ QQQQQLSNKS GCSSTSETSK GSDKEVTVAS APAQAASFTE LLIAGVAASS  180
AGGGAIGNGA DCVGIAHPGK GGAEGASTYG FSAASSFGDA PPIGMVPAPP FNFSAPGADM  240
AAHYSLAQDQ LAAPPPPAGG DYNLNFSMSS GFLGANRGTL QSNSPSNMSG HHHHHHQQQL  300
QRLDGSTISF LLGHAAAAAH PAASEGQITS TAALQLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.15e-30TCP family protein