PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G35830.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 501aa MW: 54907.1 Da PI: 6.4571

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G35830.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	4.8e-08	50	82	59	89
FAR1 59 rtgCkaklkvkkek..dgkwevtkleleHnHel 89 + C+a+++v k++ gkw+v+kl+ eHnHe+ OGLUM03G35830.1 50 EERCRAMMEVVKKDavGGKWRVSKLVVEHNHEV 82 568***99888889*************97 PP
2	FAR1	28.7	4.3e-09	112	174	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................t 48 fY Y+++vGF+ r+ ++++s ng +++++f Cs+ ++++++k+ OGLUM03G35830.1 112 FYYGYGQRVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKAngldelkeeevqdgaaG 174 9***********************************999999988877777765555555441 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MADHAAASAA ADADPSLRQG GDAADADEEE EEEEAAPSSA AGVGVGVGVE ERCRAMMEVV 60 KKDAVGGKWR VSKLVVEHNH EVEVAPCGEG EVAAAVPVMG MEFDSVHAAK GFYYGYGQRV 120 GFKARTGSNR RSVGNGVMIM QRFLCSRGNY ANRRNKANGL DELKEEEVQD GAAGKRKRGA 180 NNKARNRNPV KNNSEVIEVE SSAEKGVGTS VPNNGQDTRK MRGSKRGRTK KDVTEKDEKP 240 VVELEAEKED EVVAQDGDDV EEQKGEGEEE MEEEVQVEVQ EKRGRGRPRK ADAEGNALQA 300 RVLRELGLRA SQYTNEERKK IVSKYLSKRQ SRPVSARPAK IASRQALAER RKRGDGGRFL 360 ASEGLTQPSE RRSKRLEKQN LKKEDKGESL PEPEEAKVPL RVDPPTISND IPNHLRTPTS 420 QFLAPSHIMQ GFPGISPFGQ EPAPAPLQQP HLQQPPFHSG PQIPQAPPPD IQSLQFLSSN 480 PQLGHQATDQ SQYTIPVWDF L

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MADHAAASAA ADADPSLRQG GDAADADEEE EEEEAAPSSA AGVGVGVGVE ERCRAMMEVV  60
KKDAVGGKWR VSKLVVEHNH EVEVAPCGEG EVAAAVPVMG MEFDSVHAAK GFYYGYGQRV  120
GFKARTGSNR RSVGNGVMIM QRFLCSRGNY ANRRNKANGL DELKEEEVQD GAAGKRKRGA  180
NNKARNRNPV KNNSEVIEVE SSAEKGVGTS VPNNGQDTRK MRGSKRGRTK KDVTEKDEKP  240
VVELEAEKED EVVAQDGDDV EEQKGEGEEE MEEEVQVEVQ EKRGRGRPRK ADAEGNALQA  300
RVLRELGLRA SQYTNEERKK IVSKYLSKRQ SRPVSARPAK IASRQALAER RKRGDGGRFL  360
ASEGLTQPSE RRSKRLEKQN LKKEDKGESL PEPEEAKVPL RVDPPTISND IPNHLRTPTS  420
QFLAPSHIMQ GFPGISPFGQ EPAPAPLQQP HLQQPPFHSG PQIPQAPPPD IQSLQFLSSN  480
PQLGHQATDQ SQYTIPVWDF L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	290	KRGRGRPRK
2	350	386	RRKRGDGGRFLASEGLTQPSERRSKRLEKQNLKKEDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-09	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G35830.1