PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G35380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 651aa MW: 67927.2 Da PI: 7.1398

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G35380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	2e-12	309	365	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g OGLUM03G35380.1 309 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 365 78*****************77776664346655.77****************98 PP
2	AP2	47.9	3.4e-15	408	459	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g OGLUM03G35380.1 408 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 459 57**************999754...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MASGNSSSSS GSMAATAGGV GGWLGFSLSP HMATHCAGGV DDVGHHHHHH VHQHQQQHGG 60 GLFYNPAAVA SSFYYGGGHD AVVTSAAGGG SYYGAGFSSM PLKSDGSLCI MEALRGGDQE 120 QQGVVVSASP KLEDFLGAGP AMALSLDNSA FYYGGHGHHQ GHAQDGGAVG GDPHHGGGGF 180 LQCAVIPGAG AGHDAAYAHA ALVHDQSAAA MAAGWAAMHG GGYDIANAAA DDVCAAGPVI 240 PTGGHLHPLT LSMSSAGSQS SCVTVQAAAA GEPYMAMDAV SKKRGGADRA GQKQPVHRKS 300 IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQGGYDMEE KAARAYDLAA 360 LKYWGPSTHI NFPLEDYQEE LEEMKNMSRQ EYVAHLRRKS SGFSRGASIY RGVTRHHQHG 420 RWQARIGRVS GNKDLYLGTF STQEEAAEAY DVAAIKFRGL NAVTNFDITR YDVDKILESS 480 TLLPGELARR KGKVGDGGGA AAVADAAAAL VQAGNVAEWK MATAAALPEA ARTEQQQQHE 540 HGGHQHHDLL PSDAFSVLQD IVSTVDAAGA PPRAPHMSMA ATSLGNSREQ SPDRGVGVLA 600 TLFAKPAAAS KLYSPVPLNT WASPSPAVSS VPARAGVSIA HLPMFAAWTD A

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MASGNSSSSS GSMAATAGGV GGWLGFSLSP HMATHCAGGV DDVGHHHHHH VHQHQQQHGG  60
GLFYNPAAVA SSFYYGGGHD AVVTSAAGGG SYYGAGFSSM PLKSDGSLCI MEALRGGDQE  120
QQGVVVSASP KLEDFLGAGP AMALSLDNSA FYYGGHGHHQ GHAQDGGAVG GDPHHGGGGF  180
LQCAVIPGAG AGHDAAYAHA ALVHDQSAAA MAAGWAAMHG GGYDIANAAA DDVCAAGPVI  240
PTGGHLHPLT LSMSSAGSQS SCVTVQAAAA GEPYMAMDAV SKKRGGADRA GQKQPVHRKS  300
IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQGGYDMEE KAARAYDLAA  360
LKYWGPSTHI NFPLEDYQEE LEEMKNMSRQ EYVAHLRRKS SGFSRGASIY RGVTRHHQHG  420
RWQARIGRVS GNKDLYLGTF STQEEAAEAY DVAAIKFRGL NAVTNFDITR YDVDKILESS  480
TLLPGELARR KGKVGDGGGA AAVADAAAAL VQAGNVAEWK MATAAALPEA ARTEQQQQHE  540
HGGHQHHDLL PSDAFSVLQD IVSTVDAAGA PPRAPHMSMA ATSLGNSREQ SPDRGVGVLA  600
TLFAKPAAAS KLYSPVPLNT WASPSPAVSS VPARAGVSIA HLPMFAAWTD A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-129	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G35380.1