PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G34160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 505aa    MW: 57946.1 Da    PI: 9.9203
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G34160.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.7e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
  OGLUM03G34160.1 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59
                     9***********************************************96 PP

2SRF-TF95.13.2e-30261311151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  OGLUM03G34160.1 261 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 311
                      79***********************************************86 PP

3K-box90.43.4e-30791745100
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +  + ++ ++++ +qe+ +Lk+ +e Lq++qR+llGedL +L  +eL+qLe+q+ + lk+iRs+K+++ll+++ +l++ke++lq++n+ L++kl
  OGLUM03G34160.1  79 DAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKL 172
                      444567889************************************************************************************9 PP

            K-box  99 ee 100
                      +e
  OGLUM03G34160.1 173 DE 174
                      86 PP

4K-box104.11.7e-34331423597
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         s+e+ ++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+
  OGLUM03G34160.1 331 VLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKE 423
                      55567788899******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS  60
SNMLKTLERY QRYIYASQDA AAPTSDEMQN NYQEYVNLKA HVEILQQSQR NLLGEDLAPL  120
ATNELEQLES QVVRTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEIDVEAA  180
PPQPPWNGNC SNGHGGGGGV FSSEPPQPEH FFQALGLHAV DVNQPPAPPP GGREREREGG  240
RRRRRRRKNR RKMGRGKVQL KRIENKINRQ VTFSKRRSGL LKKANEISVL CDAEVALIIF  300
STKGKLYEYA TDSCMDKILE RYERYSYAEK VLISAESDTQ GNWCHEYRKL KAKVETIQKC  360
QKHLMGEDLE SLNLKELQQL EQQLENSLKH IRSRKSQLML ESINELQRKE KSLQEENKVL  420
QKENPCSFLQ LVEKQKVQKQ QVQWDQTQPQ TSSSSSSFMM REALPTTNIS NYPAAAGERI  480
EDVAAGQPQH VRIGLPPWML SHING
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235244REREGGRRRR
2237246REGGRRRRRR
3241246RRRRRR
4241247RRRRRRR
5242247RRRRRR
6242248RRRRRRR
7243251RRRRRKNRR
8248253KNRRKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-71MIKC_MADS family protein