PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G34160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 505aa MW: 57946.1 Da PI: 9.9203 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.4 | 1.7e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss OGLUM03G34160.1 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59 9***********************************************96 PP | |||||||
2 | SRF-TF | 95.1 | 3.2e-30 | 261 | 311 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++ OGLUM03G34160.1 261 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 311 79***********************************************86 PP | |||||||
3 | K-box | 90.4 | 3.4e-30 | 79 | 174 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + ++ ++++ +qe+ +Lk+ +e Lq++qR+llGedL +L +eL+qLe+q+ + lk+iRs+K+++ll+++ +l++ke++lq++n+ L++kl OGLUM03G34160.1 79 DAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKL 172 444567889************************************************************************************9 PP K-box 99 ee 100 +e OGLUM03G34160.1 173 DE 174 86 PP | |||||||
4 | K-box | 104.1 | 1.7e-34 | 331 | 423 | 5 | 97 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s+e+ ++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+ OGLUM03G34160.1 331 VLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKE 423 55567788899******************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS 60 SNMLKTLERY QRYIYASQDA AAPTSDEMQN NYQEYVNLKA HVEILQQSQR NLLGEDLAPL 120 ATNELEQLES QVVRTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEIDVEAA 180 PPQPPWNGNC SNGHGGGGGV FSSEPPQPEH FFQALGLHAV DVNQPPAPPP GGREREREGG 240 RRRRRRRKNR RKMGRGKVQL KRIENKINRQ VTFSKRRSGL LKKANEISVL CDAEVALIIF 300 STKGKLYEYA TDSCMDKILE RYERYSYAEK VLISAESDTQ GNWCHEYRKL KAKVETIQKC 360 QKHLMGEDLE SLNLKELQQL EQQLENSLKH IRSRKSQLML ESINELQRKE KSLQEENKVL 420 QKENPCSFLQ LVEKQKVQKQ QVQWDQTQPQ TSSSSSSFMM REALPTTNIS NYPAAAGERI 480 EDVAAGQPQH VRIGLPPWML SHING |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 244 | REREGGRRRR |
2 | 237 | 246 | REGGRRRRRR |
3 | 241 | 246 | RRRRRR |
4 | 241 | 247 | RRRRRRR |
5 | 242 | 247 | RRRRRR |
6 | 242 | 248 | RRRRRRR |
7 | 243 | 251 | RRRRRKNRR |
8 | 248 | 253 | KNRRKM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-71 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G34160.1 |