PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G33530.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 367aa MW: 40031.6 Da PI: 4.6126

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G33530.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	87.9	1.3e-27	51	137	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye+++d+ ++++isw gnsfvv+d + fa +Lp+yFkhsnf+SFvRQLn+Y v+ ++ weF+++ F +gkkell+ OGLUM03G33530.2 51 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTY----VDPDR---------WEFANEGFLRGKKELLK 131 9********************************************************....55555.........************* PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +ikr++ OGLUM03G33530.2 132 TIKRRR 137 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MNPLRVIVKE EELDFAAAAA AGEGSPSSWA VGVMDLPRPM EGLGEAGPPP FLCKTYEVVD 60 DPGTDTVISW GFAGNSFVVW DANAFAAVLL PRYFKHSNFS SFVRQLNTYV DPDRWEFANE 120 GFLRGKKELL KTIKRRRPPP SSPPSSSSSS SSSQHQQQPA AACLEVGQFG RDGVVNRLQR 180 DKSVLIAEVV KLRQEQQTTR AQMQAMEERI SAAEQKQQQM TVFLARAMKN PGFLQMLVDR 240 QAGQHGARNR VLEDALSKKR RRPIEYLLTR NGETCAAGES AAMLAADGVA EPDGDTTPRG 300 DGGGGGDTES FWMQLLSLGL EEKQREDGVA GGVQESNSGG ADVDNDEEDD DDDVDVLVQS 360 IYHLSPK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MNPLRVIVKE EELDFAAAAA AGEGSPSSWA VGVMDLPRPM EGLGEAGPPP FLCKTYEVVD  60
DPGTDTVISW GFAGNSFVVW DANAFAAVLL PRYFKHSNFS SFVRQLNTYV DPDRWEFANE  120
GFLRGKKELL KTIKRRRPPP SSPPSSSSSS SSSQHQQQPA AACLEVGQFG RDGVVNRLQR  180
DKSVLIAEVV KLRQEQQTTR AQMQAMEERI SAAEQKQQQM TVFLARAMKN PGFLQMLVDR  240
QAGQHGARNR VLEDALSKKR RRPIEYLLTR NGETCAAGES AAMLAADGVA EPDGDTTPRG  300
DGGGGGDTES FWMQLLSLGL EEKQREDGVA GGVQESNSGG ADVDNDEEDD DDDVDVLVQS  360
IYHLSPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	LKTIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	5e-86	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G33530.2