PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G30810.4
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 268aa    MW: 29064.4 Da    PI: 9.1297
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G30810.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.6e-33172228158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  OGLUM03G30810.4 172 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGTGGRF 228
                      69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MDQFLVGPAS MESRPGGTNL VEPRGQGALP SGIPIQQPWW TTSAGVGAVS PAVVAPGSGA  60
GISLSGRDGG GDDAAEESSD DSRRSGETKD GSTVQEKHHA TSQMTALASD YLTPFSQLEL  120
NQPIASAAYQ YPDSYYMGMV GPYGPQAMSA QTHFQLPGLT HSRMPLPLEI SEEPVYVNAK  180
QYHGILRRRQ SRAKAELEKK VVKARKPYLH ESRHQHAMRR ARGTGGRFLN TKKNEDGAPS  240
EKAEPNKGEQ NSGYRRIPPD LQLLQKET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-31NF-YA family protein