PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G30810.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 356aa    MW: 38634.1 Da    PI: 9.6919
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G30810.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31e-32260316158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  OGLUM03G30810.2 260 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGTGGRF 316
                      69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MDPPVHAAEL NHRNNYGPLS SPNPISLRIR ARLSLARARE PVAAAAASSS SSEEPEPQRR  60
RAPPPIGRPL GEREREGERE IDRVLLAAAS APWLLTASME SRPGGTNLVE PRGQGALPSG  120
IPIQQPWWTT SAGVGAVSPA VVAPGSGAGI SLSGRDGGGD DAAEESSDDS RRSGETKDGS  180
TVQEKHHATS QMTALASDYL TPFSQLELNQ PIASAAYQYP DSYYMGMVGP YGPQAMSAQT  240
HFQLPGLTHS RMPLPLEISE EPVYVNAKQY HGILRRRQSR AKAELEKKVV KARKPYLHES  300
RHQHAMRRAR GTGGRFLNTK KNEDGAPSEK AEPNKGEQNS GYRRIPPDLQ LLQKET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.29e-31NF-YA family protein