PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G29930.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 642aa MW: 71016.8 Da PI: 6.1302

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G29930.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.4	5.7e-09	401	438	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + OGLUM03G29930.1 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438 664559******************************88 PP
2	BELL	120.2	9.1e-39	264	335	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi OGLUM03G29930.1 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335 689*******************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF 60 MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND 120 THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYQGDD 180 NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS 240 KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF 300 DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY 360 IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ 420 TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE 480 DLKSSMSQTY QPSQLGESKA NIGMMSLGGA PAGFHNEGNQ DDSFMNLMLK DQRPGEAEGS 540 LLHDAVAHHS DENARFMAYH LSGLGRYGNS NVSLTLGLQH PDNRLSVQNT HQPGFAGAGE 600 EIYNSTASLG VAAASSSDYE STNQIDQRQR FEPSPLMHDF VA

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYQGDD  180
NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS  240
KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF  300
DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY  360
IDQQLRQQRA FQQYGLLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEADLDSN SSSDNVPRSK DKIATSEDKE  480
DLKSSMSQTY QPSQLGESKA NIGMMSLGGA PAGFHNEGNQ DDSFMNLMLK DQRPGEAEGS  540
LLHDAVAHHS DENARFMAYH LSGLGRYGNS NVSLTLGLQH PDNRLSVQNT HQPGFAGAGE  600
EIYNSTASLG VAAASSSDYE STNQIDQRQR FEPSPLMHDF VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-113	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G29930.1