PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G29920.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 349aa MW: 37018.1 Da PI: 5.9059

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G29920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.9	3.4e-08	287	319	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +e+ LA +gL+ +q+++WF N R + OGLUM03G29920.1 287 HPYPNDNEKLMLAVATGLSRSQISNWFINARVR 319 89*****************************88 PP
2	BELL	60.7	3.4e-20	141	203	10	72
BELL 10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 akLlsll e++ r+++y +l+ v +sFe + g g+ + Yt+l +a+SrhF +L+ ai ++ OGLUM03G29920.1 141 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSRHFGSLRRAILRKL 203 8**********************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MVASKQLHSQ RCGGHYCQLH HHRPEEIAGA GAESHRRDGS SGCGGAGPMV VLTLGSGAAA 60 AEDDGGGRSR CCCGAGGAAP ATMVSALRGS RYLLPAQELL REAVSAAAAS ARGGDDDDEA 120 VASFPHDGKS TGIGGGGGVQ AKLLSLLSEL ESRHEHYFGE LRRVSASFEP ALGAGATAGY 180 TALMAQAMSR HFGSLRRAIL RKLRLHAAAA ARTRSALLRL ARDAMEEDDE GDGEEEEEEE 240 EDVVNRVVRR TKQAAAARAE QAWRPLRGLP EDAVGVLRAW LFDHFLHPYP NDNEKLMLAV 300 ATGLSRSQIS NWFINARVRL WKPMVEEMYN DEFDDDDAGS GGGGASSSS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MVASKQLHSQ RCGGHYCQLH HHRPEEIAGA GAESHRRDGS SGCGGAGPMV VLTLGSGAAA  60
AEDDGGGRSR CCCGAGGAAP ATMVSALRGS RYLLPAQELL REAVSAAAAS ARGGDDDDEA  120
VASFPHDGKS TGIGGGGGVQ AKLLSLLSEL ESRHEHYFGE LRRVSASFEP ALGAGATAGY  180
TALMAQAMSR HFGSLRRAIL RKLRLHAAAA ARTRSALLRL ARDAMEEDDE GDGEEEEEEE  240
EDVVNRVVRR TKQAAAARAE QAWRPLRGLP EDAVGVLRAW LFDHFLHPYP NDNEKLMLAV  300
ATGLSRSQIS NWFINARVRL WKPMVEEMYN DEFDDDDAGS GGGGASSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75430.1	6e-35	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G29920.1