PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G29400.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 333aa MW: 36646.1 Da PI: 6.9631

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G29400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.9	2.3e-10	250	283	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++e++ LA+++gL+++qV++WF N+R ++ OGLUM03G29400.1 250 WPYPSEAEKAALAESTGLDKKQVTNWFINQRKRH 283 58*****************************885 PP
2	ELK	33.4	9.6e-12	203	222	3	22
ELK 3 KhqLlrKYsgyLgsLkqEFs 22 +++L++KYsgyL+sL++E+s OGLUM03G29400.1 203 RRHLMNKYSGYLNSLWTEIS 222 79*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MEQLHLLLAS GGGSKASTTI TPFCLARDHA STSSPSPAAV AAPAPPPEAE QSIHGSGTGL 60 QSSEAMIKAK IMSHPLYPSL LRAFVDCKKV GAPPEVVGRL SSLAVVTDVP QYSGDRWLPA 120 QQPAADPELD QFMETYCYML TRYGQELARP IQEAEEFFRG IEEQIDSLAL DEDVSYDYED 180 EVAGGLPEKS AAFGENEVTT TRRRHLMNKY SGYLNSLWTE ISNKKKNSTG HLPRDARHKL 240 LQWWHLHYRW PYPSEAEKAA LAESTGLDKK QVTNWFINQR KRHWKPKPAA AMDAGFLQMH 300 PRYGASSSSS PAAALRVEDG GGGRSAYHPR GGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	4e-65	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G29400.1