PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G27760.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 146aa MW: 15360.6 Da PI: 8.487

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G27760.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.1	5.8e-13	8	32	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV OGLUM03G27760.2 8 CGGCRTLLMYTRNADTVRCSCCSTV 32 ***********************99 PP
2	zf-LSD1	49.4	7.4e-16	46	69	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ OGLUM03G27760.2 46 CGQCRTTLMYPYGAPSVKCAICHY 69 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence
MEMAHLICGG CRTLLMYTRN ADTVRCSCCS TVNLVRPVNN IAHVSCGQCR TTLMYPYGAP 60 SVKCAICHYI TNTGMNTVAP TPSPMPTSSG SSYNAPPSGS SYNAPPSTSV PTSRPQNVTV 120 VVENPMTVDE KGKLVSNVVV GVTTGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	3e-42	LSD family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G27760.2