PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G27310.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 443aa MW: 46664.1 Da PI: 9.8204

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G27310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	70.7	2.2e-22	116	160	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+ OGLUM03G27310.1 116 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHM 160 9*****************************************996 PP
2	Myb_DNA-binding	30.2	1e-09	117	159	1	39
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkq 39 r+rWTt ++ +v+av++lGg+ t+k++ + m+ k +tl + OGLUM03G27310.1 117 RMRWTTALHAHFVQAVELLGGHeraTPKSVLELMNvKDLTLAH 159 89**********************************9999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MATTAATAPD LSLHISPPSP PDMAAGGETM EQLAEPKLCL GFGTAAAAAA AEQYNNGGCN 60 LQQQQWLHQP SQIQRFKKSA SGGSPVCSGG ATGTGGVAAA RSGNGGGGGK RSSRAPRMRW 120 TTALHAHFVQ AVELLGGHER ATPKSVLELM NVKDLTLAHM YRTVKGTTDR TCAEGHGQMR 180 DMGFLRRGGG GVDGFDVLGN TSSIAIANIR RQAAGSPGEH HQETMMSSAW CQPQFAQQQT 240 TACGLPLPCP YIVSTHHYLI KQNQLGGWRG SSGQQLAVQQ DAAAHSSLGI KNMGQQRLPA 300 AAAGSHDDEI VVASRIGRRS SGPAGFARSS PPAASGCWTP TTTTWSPPPP LTPQTTSTTT 360 TTRGSSVVVA AAAQACMKQQ QQQQTPSRVP SLEISLGRQG WQSGSSLEQQ QQHQQRHHQQ 420 QQRQRSVESS ASKELTLLNA FMA

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MATTAATAPD LSLHISPPSP PDMAAGGETM EQLAEPKLCL GFGTAAAAAA AEQYNNGGCN  60
LQQQQWLHQP SQIQRFKKSA SGGSPVCSGG ATGTGGVAAA RSGNGGGGGK RSSRAPRMRW  120
TTALHAHFVQ AVELLGGHER ATPKSVLELM NVKDLTLAHM YRTVKGTTDR TCAEGHGQMR  180
DMGFLRRGGG GVDGFDVLGN TSSIAIANIR RQAAGSPGEH HQETMMSSAW CQPQFAQQQT  240
TACGLPLPCP YIVSTHHYLI KQNQLGGWRG SSGQQLAVQQ DAAAHSSLGI KNMGQQRLPA  300
AAAGSHDDEI VVASRIGRRS SGPAGFARSS PPAASGCWTP TTTTWSPPPP LTPQTTSTTT  360
TTRGSSVVVA AAAQACMKQQ QQQQTPSRVP SLEISLGRQG WQSGSSLEQQ QQHQQRHHQQ  420
QQRQRSVESS ASKELTLLNA FMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-25	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G27310.1