PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G26820.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 305aa MW: 32871.6 Da PI: 7.1889

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G26820.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135	2.8e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++e+reda++sl+yeAear+rdPvyG+v+ i+ lq +++q++ ++ OGLUM03G26820.2 7 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTKLLNDLQPEQREDAVNSLAYEAEARLRDPVYGCVAYISILQLRIKQVRDQI 100 7********************************************************************************************9 PP DUF260 95 allkee 100 + +++e OGLUM03G26820.2 101 VDARKE 106 998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVTK LLNDLQPEQR 60 EDAVNSLAYE AEARLRDPVY GCVAYISILQ LRIKQVRDQI VDARKELAAY IGPTAFAPVV 120 AAAAPHPHYL PPADYHHQQL QAQGGGGGAG MGAAGYAHQV VQHQMAGLQV QHPHPQPHHH 180 HHHQQMVNAQ HMALVEVARD QDMLRARQAG HANAGATVAV EAPGSSSLNA DTFDGGPFLL 240 RQQPPSSVQT EPAMALPYHM EPSPPQPSSG HSHDEVSQHH HHHHHHRHHH TDGSDEGSGG 300 AAPPG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-59	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G26820.2