PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G26820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 305aa MW: 32871.6 Da PI: 7.1889 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.8e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++e+reda++sl+yeAear+rdPvyG+v+ i+ lq +++q++ ++ OGLUM03G26820.1 7 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTKLLNDLQPEQREDAVNSLAYEAEARLRDPVYGCVAYISILQLRIKQVRDQI 100 7********************************************************************************************9 PP DUF260 95 allkee 100 + +++e OGLUM03G26820.1 101 VDARKE 106 998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVTK LLNDLQPEQR 60 EDAVNSLAYE AEARLRDPVY GCVAYISILQ LRIKQVRDQI VDARKELAAY IGPTAFAPVV 120 AAAAPHPHYL PPADYHHQQL QAQGGGGGAG MGAAGYAHQV VQHQMAGLQV QHPHPQPHHH 180 HHHQQMVNAQ HMALVEVARD QDMLRARQAG HANAGATVAV EAPGSSSLNA DTFDGGPFLL 240 RQQPPSSVQT EPAMALPYHM EPSPPQPSSG HSHDEVSQHH HHHHHHRHHH TDGSDEGSGG 300 AAPPG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-59 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G26820.1 |