PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G26640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 23618.6 Da PI: 6.4849 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.7 | 1e-29 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+q OGLUM03G26640.1 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQ 95 6*********************9999888899************************************************************** PP DUF260 90 lkaelallk 98 ++a+++l++ OGLUM03G26640.1 96 AAADAVLRG 104 ***998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGDSLRAL SAVPAAFTDR 120 DMAGLYGNVG AAAGTSSSSP DNDNSSASAA PRRKRPRNNG AGAGVGQQQL PHAVAAVLQS 180 CELDLCLTPV SPPAVQLVGG GGGASDEHST TTCEEASDGD GAGAPTLLNL FS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-56 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G26640.1 |