PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G23580.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 204aa    MW: 21065.2 Da    PI: 8.1436
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G23580.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.4e-302103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+pe +r+++++sl+yeA  r+ +Pv+Gavg+++++++ l+q
  OGLUM03G23580.1   2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPEVQRPALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLCQ 95 
                      6*********************9998656778************************************************************** PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  OGLUM03G23580.1  96 AAVETVLR 103
                      **999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPEVQR  60
PALFQSLLYE AAGRTINPVH GAVGLLWTGN WPLCQAAVET VLRGGAIGPL PELGGACGGA  120
GGDLYGAAKR NGGWSTFSTA KRVRKAEVPE APSCDLGLCL SPGSPPAVGE RKPALRPGTP  180
SMSSDESGTT TGGERDPVLL NLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-69LBD family protein