PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G23560.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 528aa    MW: 56791.6 Da    PI: 9.2271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G23560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32200256259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i Y+g+Hnh+
  OGLUM03G23560.1 200 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQILYRGQHNHQ 256
                      8****************************************.***************8 PP
2WRKY36.68.9e-12366388123
                      ---SS-EEEEEEE--TT-SS-EE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                      ldDgy+WrKYGqK+vkg+++pr+
  OGLUM03G23560.1 366 LDDGYRWRKYGQKVVKGNPHPRA 388
                      59********************6 PP
3WRKY55.79.5e-184344751859
                      -SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  18 sefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       e +rsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  OGLUM03G23560.1 434 PEKTRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 475
                      6789*************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MAAHEGGGNG ARRPPAPPLL PTLSLPPRSA AGSLFSAESS PGALTLAASL FPDAPSPAFQ  60
GSFTQLLVGA MGYPAASAPA PPSPFPVPHG LSPTAFLGGS PGLFSPTGNF EMSHQQALAQ  120
VTAEAVHSPY SMINQSDFSL PFSSTTTSVL ASQHVNSSAN VSSPREIPTL PSHTDNSNIE  180
STEVSHGFQT TALTEDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHLSC PVKKKVERSS  240
DGQITQILYR GQHNHQRPPK RRSKDGGALL NEADVSPEKE DASTRSEQGS QDYSGKFKAS  300
NDGGPSSSRR GDRGEQISGS SDSNDQGEEE VKVEGGATSD GNANKRHVPA PAQRIIVQTT  360
SEVDLLDDGY RWRKYGQKVV KGNPHPRAPC YLGPINYSKM GDPFYATTFH QMSSAMMSHW  420
NMGLVLQKYR SKVPEKTRSY YKCTYQGCDV KKHIERSSQD PKAVITTYEG KHSHDVPAAR  480
NSSHSSANAN VSSSSNLPHK DRGQRSSRRD GLRNASSVSS LQLKEESG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257262RPPKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.26e-85WRKY family protein