PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G23340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 21352.2 Da PI: 8.8608 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.4e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+++ L H +H OGLUM03G23340.1 48 FRCSVCGKAFPSHQALGGHKASH 70 89*************99998887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MVTNMTHDDY VSLCLMALAQ AGVGGQWPAQ KQQIDMAPPA PERELLRFRC SVCGKAFPSH 60 QALGGHKASH RKPPTAALPM HVIDAPLPPS AEETASSSTT TTTSGGGRHR CSVCHRTFAT 120 GQALGGHKRC HYWDGLSVVS VTASASGSGS SSVRNFDLNL KPVPETVAAG VKRWGEEEEV 180 QSPLPFKKRR LSSPSLELNL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 1e-31 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G23340.1 |