PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G22810.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 417aa    MW: 44259.8 Da    PI: 6.7122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G22810.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071355377123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C+k F +   L  H r+H
  OGLUM03G22810.1 355 FVCPICSKEFGSGQALGGHKRSH 377
                      89**************9999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MDDDDVAVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD  60
DEGGDGKTVR RWMQSGGGYG LRENPKKTRR LSAGSGGGGG GGDNDDGDAC HHRGGDLLSS  120
SSCRPVLGRV RSHAPPAGGA AYADDSEDVG VDVDGGGGDD RYRDREMLVM AAPRRRPRSM  180
RVPAPVRDEF VVDEEPEDVA LCLVMLSRDT GRPWNSRPSD EYSSLMYNSS YHHHHDAVSD  240
DDLELSLSSP YADTEIRTKK RRKTTGAAST AGGEKRGRYE CHGCGRAFLS YQALGGHRAS  300
HKRINSNCSL VKPPADQPEP SIETSFSSAS TSVSPADTMI SAATISKTVK KATKFVCPIC  360
SKEFGSGQAL GGHKRSHSIA GELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179PRRRPRS
2259263KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-20C2H2 family protein