PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G22040.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 217aa    MW: 22873.3 Da    PI: 7.0232
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G22040.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.15.2e-5823118297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+plk yl+k+re+eg
  OGLUM03G22040.1  23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEG 116
                      89******************************************************************************************** PP

            NF-YB  96 ek 97 
                      e+
  OGLUM03G22040.1 117 ER 118
                      97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MPDSDNDSGG PSNYAGGELS SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV  60
SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEDY VDPLKHYLHK FREIEGERAA  120
ASTTGAGTSA ASTTPPQQQH TANAAGGYAG YAAPGAGPGG MMMMMGQPMY GSPPPPPQQQ  180
QQQHHHMAMG GRGGFGHHPG GGGSSSSSGH GRQDRGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-69NF-YB family protein