PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G20500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 330aa MW: 34174.5 Da PI: 7.7676

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G20500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.2e-17	16	64	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+lv +v q+Gg+ +W++ +++ g++R+ k+c++rw +yl OGLUM03G20500.1 16 KGPWTREEDEKLVAYVDQHGGHgSWRSLPKRAGLNRCCKSCRLRWINYL 64 79*****************9***********************97 PP
2	Myb_DNA-binding	54.4	2.8e-17	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++ ++ ++ lG++ W+tIa +++ gRt++++k++w++ OGLUM03G20500.1 70 RGNFTPEEEQAIITLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNT 113 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGRLRPPCCD ESSVKKGPWT REEDEKLVAY VDQHGGHGSW RSLPKRAGLN RCCKSCRLRW 60 INYLRPDIKR GNFTPEEEQA IITLHSVLGN KWSTIATRLP GRTDNEIKNY WNTRLKKRLI 120 GAGIDPATHC ARPRPPAPGD LATALPQLVA LASLAVDLAV GHAAAAGGAW GAANGAVDYQ 180 QADAAAAQLQ CLQHLLLQPQ TTPATSATSG GGGHPTELNA ASSFLTQAVA SYAAAAATPL 240 PSLVVPGGSQ PLELKRWQDH IGGDHVGAVS PFAGAATVTG HHGGGGGGGD TPLSLCGGGG 300 GGGEFLPSEL TALLCSANAI GDLQSSNLEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-69	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G20500.1