PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G16500.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 41634 Da PI: 8.0786 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.6e-11 | 59 | 82 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ OGLUM03G16500.3 59 EPDCSYYMRTGLCRFGMTCKFNHP 82 789********************8 PP | |||||||
2 | zf-CCCH | 39.1 | 1.3e-12 | 104 | 128 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OGLUM03G16500.3 104 QPECQYYLKTGTCKFGATCKFHHPR 128 799********************96 PP | |||||||
3 | zf-CCCH | 39.8 | 7.6e-13 | 251 | 276 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OGLUM03G16500.3 251 DQPECQFYMKTGDCKFGAVCKFHHPK 276 689*********************96 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ OGLUM03G16500.3 296 PGEPICTFYSRYGICKFGPNCKFDHPM 322 5799*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence |
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP 60 DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA 120 TCKFHHPREK AAMATRVQLN ALGYPLRPNE KECAYYLRTG QWPGHSSYAQ VIVPPGLVQV 180 PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV 240 QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCVLSSL GLPLRPGEPI 300 CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR 360 SRRITHSDSQ QIPSGERGTE REAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-137 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G16500.3 |