PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G16500.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 409aa MW: 44386.1 Da PI: 8.3686

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G16500.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7.2e-11	59	82	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ OGLUM03G16500.2 59 EPDCSYYMRTGLCRFGMTCKFNHP 82 789********************8 PP
2	zf-CCCH	38.9	1.4e-12	104	128	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OGLUM03G16500.2 104 QPECQYYLKTGTCKFGATCKFHHPR 128 799********************96 PP
3	zf-CCCH	18.4	3.9e-06	150	166	3	19
S---SGGGGTS--TTTT CS zf-CCCH 3 telCrffartGtCkyGd 19 +++C +++rtG+Ck+G+ OGLUM03G16500.2 150 EKECAYYLRTGQCKFGS 166 679*************8 PP
4	zf-CCCH	39.7	8.2e-13	276	301	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OGLUM03G16500.2 276 DQPECQFYMKTGDCKFGAVCKFHHPK 301 689*********************96 PP
5	zf-CCCH	38.5	1.9e-12	321	347	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ OGLUM03G16500.2 321 PGEPICTFYSRYGICKFGPNCKFDHPM 347 5799*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP 60 DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA 120 TCKFHHPREK AAMATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTWAV TNWPLSRSAS 180 FIASPRWPGH SSYAQVIVPP GLVQVPGWNP YAAQIGSSSS DDQQRTAGGA QYYTGSRHSE 240 TPNMGDQGMF SSYQAGSVPL GLYTVQRESI FPERPDQPEC QFYMKTGDCK FGAVCKFHHP 300 KERIIPTPNC VLSSLGLPLR PGEPICTFYS RYGICKFGPN CKFDHPMGTV MYGLATSPTG 360 DVSARRMLAP VPAHSEVSPD NVSGRSRRIT HSDSQQIPSG ERGTEREAS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAMATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTWAV TNWPLSRSAS  180
FIASPRWPGH SSYAQVIVPP GLVQVPGWNP YAAQIGSSSS DDQQRTAGGA QYYTGSRHSE  240
TPNMGDQGMF SSYQAGSVPL GLYTVQRESI FPERPDQPEC QFYMKTGDCK FGAVCKFHHP  300
KERIIPTPNC VLSSLGLPLR PGEPICTFYS RYGICKFGPN CKFDHPMGTV MYGLATSPTG  360
DVSARRMLAP VPAHSEVSPD NVSGRSRRIT HSDSQQIPSG ERGTEREAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-151	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G16500.2